import physbo.predictor
[docs]class predictor(physbo.predictor.base_predictor):
"""predictor"""
def __init__(self, config, model=None):
"""
Parameters
----------
config: physbo.misc.set_config
configuration
model: physbo.gp.core.model
"""
super(predictor, self).__init__(config, model)
[docs] def fit(self, training, num_basis=None):
"""
Fitting model to training dataset
Parameters
----------
training: physbo.variable
dataset for training
num_basis: int
the number of basis (default: self.config.predict.num_basis)
"""
if self.model.prior.cov.num_dim is None:
self.model.prior.cov.num_dim = training.X.shape[1]
self.model.fit(training.X, training.t, self.config)
self.delete_stats()
[docs] def get_basis(self, *args, **kwds):
"""
Parameters
----------
args
kwds
Returns
-------
"""
pass
[docs] def get_post_params(self, *args, **kwds):
"""
Parameters
----------
args
kwds
Returns
-------
"""
pass
[docs] def update(self, training, test):
self.prepare(training)
[docs] def prepare(self, training):
"""
Initializing model by using training data set
Parameters
----------
training: physbo.variable
dataset for training
"""
self.model.prepare(training.X, training.t)
[docs] def delete_stats(self):
self.model.stats = None
[docs] def get_post_fmean(self, training, test):
"""
Calculating posterior mean value of model
Parameters
----------
training: physbo.variable
training dataset. If already trained, the model does not use this.
test: physbo.variable
inputs
Returns
-------
numpy.ndarray
"""
if self.model.stats is None:
self.prepare(training)
return self.model.get_post_fmean(training.X, test.X)
[docs] def get_post_fcov(self, training, test, diag=True):
"""
Calculating posterior variance-covariance matrix of model
Parameters
----------
training: physbo.variable
training dataset. If already trained, the model does not use this.
test: physbo.variable
inputs
diag: bool
Diagonlization flag in physbo.exact.get_post_fcov function.
Returns
-------
numpy.ndarray
"""
if self.model.stats is None:
self.prepare(training)
return self.model.get_post_fcov(training.X, test.X, diag=diag)
[docs] def get_post_samples(self, training, test, alpha=1):
"""
Drawing samples of mean values of model
Parameters
----------
training: physbo.variable
training dataset. If already trained, the model does not use this.
test: physbo.variable
inputs (not used)
alpha: float
tuning parameter of the covariance by multiplying alpha**2 for np.random.multivariate_normal.
Returns
-------
numpy.ndarray
"""
if self.model.stats is None:
self.prepare(training)
return self.model.post_sampling(training.X, test.X, alpha=alpha)
[docs] def get_predict_samples(self, training, test, N=1):
"""
Drawing samples of values of model
Parameters
----------
training: physbo.variable
training dataset. If already trained, the model does not use this.
test: physbo.variable
inputs
N: int
number of samples
(default: 1)
Returns
-------
numpy.ndarray (N x len(test))
"""
if self.model.stats is None:
self.prepare(training)
return self.model.predict_sampling(training.X, test.X, N=N)